Stock Number: 006951 Strain Name: STOCK Notch1tm2Rko/GridJ

Allele: Notch1tm2Rko Protocol Name: Notch1tm2Rko Method: Standard PCR Version: 1.1 Created: 03-July -2008 Updated: 24-September-2009

Expected Results: Mutant = 281 bp Heterozygote = 231 bp and 281 bp Wild type = 231 bp

Gel Image

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Gel Information: Separated by gel electrophoresis on a 1.5% agarose gel.

Protocol Primers

Primer 5' Label Sequence 5' --> 3' 3' Label Primer Type oIMR6748 - TGC CCT TTC CTT AAA AGT GG - Mutant Forward oIMR6749 - GCC TAC TCC GAC ACC CAA TA - Mutant Reverse

Number of Reactions

Reaction/Components  Reaction Component Volume (µl) Final Concentration Total Volume (µl) ddH2O 3.96 - 3.96 10 X PCR Buffer II (ABI) 1.20 1.00 X 1.20 25 mM MgCl2 0.96 2.00 mM 0.96 2.5 mM dNTP 0.96 0.20 mM 0.96 20 uM oIMR6748 0.60 1.00 uM 0.60 20 uM oIMR6749 0.60 1.00 uM 0.60 5 mM DNA Loading Dye 1.66 0.69 mM 1.66 5 U/ul Taq DNA Polymerase 0.06 0.03 U/ul 0.06 DNA 2.00 - 2.00

Cycling  Step # Temp °C Time Note 1 94 3 min - 2 94 30 sec - 3 62 30 sec - 4 72 30 sec repeat steps 2-4 for 35 cycles 5 72 2 min - 6 10 - hold

This genotyping protocol is used for the following strains:   Stock Number Strain Name 006951 STOCK Notch1tm2Rko/GridJ 007181 B6.129X1-Notch1tm2Rko/GridJ Genotyping resources and troubleshooting This page contains guidelines, frequently asked questions, and helpful external links to genotyping and PCR resources.