Mammalian Phenotype Terms assigned by genotype
Chrdtm1Emdr/Chrdtm1Emdr
either: B6SJL.129-Chrdtm1Emdr or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * SJL/J)
- lethality-prenatal/perinatal
- embryonic lethality before turning of embryo
(MGI Ref ID J:83662)
- 12% of homozygous mutant embryos are resorbed at E8.5 (50 out of 57 expected)
- no homozygotes with an abnormal allantois survive past E8.5
- lethality throughout fetal growth and development
(MGI Ref ID J:83662)
- 86% of homozygotes are still alive at E14.5; however, a sharp increase in lethality is noted after E14.5
- perinatal lethality
(MGI Ref ID J:83662)
- only 49% (95 out of 194) of homozygotes are recovered at birth
- a few attempt, unsuccessfully, to inflate their lungs
- most are still born due to cardio-respiratory failure
- embryogenesis phenotype
- abnormal embryonic tissue morphology
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display a reduced embryonic region, while the remaining 46 appear morphologically normal
- abnormal branchial pouch morphology
(MGI Ref ID J:83662)
- at E9.5, the pharyngeal pouches are reduced to a single swelling in the anterior-most region
- abnormal neural crest cell migration
(MGI Ref ID J:83662)
- at E10.5, homozygotes show absence of neural crest cell migration through the peripharyngeal region into the proximity of the heart, resulting in lack of outflow tract septation
- absent branchial arches
(MGI Ref ID J:83662)
- at E9.0, the second (hyoid) pharyngeal arch is absent
- in addition, pharyngeal arches three to six fail to form
- absent notochord
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display absence of a notochord
- homozygotes that die perinatally show absence of an anterior notochord at E14.5
- absent somites
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display absence of somites
- abnormal extraembryonic tissue morphology
(MGI Ref ID J:83662)
- enlarged allantois
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display an enlarged allantois with an abundance of extraembryonic mesodermal cells
- abnormal mesoderm development
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes show early ventralization of the mesoderm, with increased extraembryonic mesodermal cells noted in the allantois
- absent mesoderm
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display absence of trunk mesoderm
- reduced embryo size
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display a reduced body size
- craniofacial phenotype
- abnormal cranial base morphology
(MGI Ref ID J:83662)
- newborn homozygotes display fused basioccipital and basisphenoid bones while the alisphenoid appears normal
- fusion of basioccipital and basisphenoid bone
(MGI Ref ID J:83662)
- newborn homozygotes display fused basioccipital and basisphenoid bones
- at E14.5, the basioccipital and basisphenoid cartilages are fused; the ossification centre of the basioccipital is narrower and extends into the basisphenoid
- presphenoid bone hypoplasia
(MGI Ref ID J:83662)
- newborn homozygotes display a hypoplastic presphenoid bone
- abnormal ear distance/ position
(MGI Ref ID J:83662)
- newborn homozygotes have external ears that are set abnormally close to the eyes
- abnormal hyoid bone morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit hyoid bone hypoplasia
- abnormal mandible morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack the coronoid, condylar and angular processes
- absent mandibular angle
(MGI Ref ID J:83662)
- newborn homozygotes lack the angular process
- absent mandibular condyloid process
(MGI Ref ID J:83662)
- newborn homozygotes lack the condylar process
- absent mandibular coronoid process
(MGI Ref ID J:83662)
- newborn homozygotes lack the coronoid process
- short mandible
(MGI Ref ID J:83662)
- newborn homozygotes display an abnormally small jaw
- abnormal palate morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack a secondary palate
- abnormal palatine bone morphology
(MGI Ref ID J:83662)
- the palatine shelves fail to extend medially to form the secondary palate
- abnormal squamosal bone morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack the squama temporalis
- abnormal zygomatic arch morphology
(MGI Ref ID J:83662)
- newborn homozygotes display a shorter zygomatic arch
- absent branchial arches
(MGI Ref ID J:83662)
- at E9.0, the second (hyoid) pharyngeal arch is absent
- in addition, pharyngeal arches three to six fail to form
- microcephaly
(MGI Ref ID J:83662)
- newborn homozygotes display microcephaly
- small ears
(MGI Ref ID J:83662)
- newborn homozygotes exhibit small external ears
- small temporal bone
(MGI Ref ID J:83662)
- newborn homozygotes a smaller temporal bone
- cardiovascular system phenotype
- abnormal artery morphology
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit an enlarged anterior spinal artery
- abnormal aortic arch morphology
(MGI Ref ID J:83662)
- at birth, part of the aortic arch is absent
- retroesophageal right subclavian artery
(MGI Ref ID J:83662)
- depending of the laterality of the descending aorta, the right or left subclavian arteries adopt an abnormal retrooesophageal position
- right aortic arch
(MGI Ref ID J:83662)
- 40% of newborn homozygotes display an abnormal right-turning aortic arch; the descending aorta is placed on the right side of the esophagus and the left subclavian runs posterior to it
- abnormal carotid artery morphology
(MGI Ref ID J:83662)
- in newborns, the common carotid arteries directly join the truncus arteriosus, resulting in the absence of the brachiocephalic artery and part of the aortic arch
- abnormal pulmonary trunk morphology
(MGI Ref ID J:83662)
- in newborns, the pulmonary arteries originate directly from the proximal truncus arteriosus, resulting in the absence of a common pulmonary trunk
- hemorrhage
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit severe hemorrhage
- increased vasodilation
(MGI Ref ID J:83662)
- persistent truncus arteriosis
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit persistent truncus arteriosus
- right ventricle hypertrophy
(MGI Ref ID J:83662)
- skeleton phenotype
- abnormal cervical atlas morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack the anterior arch of the atlas
- abnormal cranial base morphology
(MGI Ref ID J:83662)
- newborn homozygotes display fused basioccipital and basisphenoid bones while the alisphenoid appears normal
- fusion of basioccipital and basisphenoid bone
(MGI Ref ID J:83662)
- newborn homozygotes display fused basioccipital and basisphenoid bones
- at E14.5, the basioccipital and basisphenoid cartilages are fused; the ossification centre of the basioccipital is narrower and extends into the basisphenoid
- presphenoid bone hypoplasia
(MGI Ref ID J:83662)
- newborn homozygotes display a hypoplastic presphenoid bone
- abnormal hyoid bone morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit hyoid bone hypoplasia
- abnormal laryngeal cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes display reduced laryngeal cartilages
- abnormal cricoid cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit cricoid cartilage hypoplasia
- abnormal thyroid cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit thyroid cartilage hypoplasia
- abnormal mandible morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack the coronoid, condylar and angular processes
- absent mandibular angle
(MGI Ref ID J:83662)
- newborn homozygotes lack the angular process
- absent mandibular condyloid process
(MGI Ref ID J:83662)
- newborn homozygotes lack the condylar process
- absent mandibular coronoid process
(MGI Ref ID J:83662)
- newborn homozygotes lack the coronoid process
- short mandible
(MGI Ref ID J:83662)
- newborn homozygotes display an abnormally small jaw
- abnormal palatine bone morphology
(MGI Ref ID J:83662)
- the palatine shelves fail to extend medially to form the secondary palate
- abnormal squamosal bone morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack the squama temporalis
- abnormal thoracic vertebrae morphology
(MGI Ref ID J:83662)
- abnormal vertebral arch development
(MGI Ref ID J:83662)
- at E14.5, homozygotes display underdeveloped vertebral neural arches
- abnormal zygomatic arch morphology
(MGI Ref ID J:83662)
- newborn homozygotes display a shorter zygomatic arch
- small temporal bone
(MGI Ref ID J:83662)
- newborn homozygotes a smaller temporal bone
- small vertebral body
(MGI Ref ID J:83662)
- newborn homozygotes exhibit reduced vertebral bodies, with delayed ossification and occasional loss of other elements of the vertebrae e.g. spinous processes, neural arches and the anterior arch of the atlas
- hearing/vestibular/ear phenotype
- abnormal ear distance/ position
(MGI Ref ID J:83662)
- newborn homozygotes have external ears that are set abnormally close to the eyes
- abnormal middle ear morphology
(MGI Ref ID J:83662)
- abnormal tympanic ring morphology
(MGI Ref ID J:83662)
- newborn homozygotes display a malformed tympanic ring
- decreased tympanic ring size
(MGI Ref ID J:83662)
- newborn homozygotes display a reduced tympanic ring
- absent auditory tube
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit absence of the Eustachian tube
- absent inner ear
(MGI Ref ID J:83662)
- newborn homozygotes exhibit hypoplasia/absence of the inner ear
- small ears
(MGI Ref ID J:83662)
- newborn homozygotes exhibit small external ears
- small otic capsule
(MGI Ref ID J:83662)
- newborn homozygotes display a malformed and reduced otic capsule
- small otic vesicle
(MGI Ref ID J:83662)
- at E9.0, otic vesicles are reduced to half their normal diameter
- a conspicuous indentation is noted in the neck region
- endocrine/exocrine gland phenotype
- abnormal thyroid gland morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit a thyroid gland of irregular shape
- thyroid hypoplasia
(MGI Ref ID J:83662)
- newborn homozygotes display thyroid hypoplasia
- absent parathyroid glands
(MGI Ref ID J:83662)
- newborn homozygotes lack parathyroid glands (derivatives of pharyngeal pouches 3 and 4)
- nervous system phenotype
- abnormal cranial ganglia morphology
(MGI Ref ID J:83662)
- at E9.5, homozygotes display severe cranial sensory ganglia abnormalities, including loss of epibranchial placode-derived ganglia
- abnormal trigeminal ganglion morphology
(MGI Ref ID J:83662)
- at E9.5, the trigeminal ganglia are deformed and displaced
- absent nodose ganglion
(MGI Ref ID J:83662)
- at E9.5, the nodose ganglion is either extremely reduced or entirely absent
- absent petrosal ganglion
(MGI Ref ID J:83662)
- at E9.5, the petrosal ganglion is either extremely reduced or entirely absent
- small geniculate ganglion
(MGI Ref ID J:83662)
- at E9.5, the geniculate ganglion is either extremely reduced or entirely absent
- small nodose ganglion
(MGI Ref ID J:83662)
- at E9.5, the nodose ganglion is either extremely reduced or entirely absent
- small petrosal ganglion
(MGI Ref ID J:83662)
- at E9.5, the petrosal ganglion is either extremely reduced or entirely absent
- abnormal neural crest cell migration
(MGI Ref ID J:83662)
- at E10.5, homozygotes show absence of neural crest cell migration through the peripharyngeal region into the proximity of the heart, resulting in lack of outflow tract septation
- abnormal neural plate morphology
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes exhibit a significantly hypoplastic and poorly differentiated neural plate
- abnormal vestibulocochlear ganglion morphology
(MGI Ref ID J:83662)
- at E9.5, the vestibulocochlear ganglia are deformed and displaced
- respiratory system phenotype
- abnormal laryngeal cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes display reduced laryngeal cartilages
- abnormal cricoid cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit cricoid cartilage hypoplasia
- abnormal thyroid cartilage morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit thyroid cartilage hypoplasia
- abnormal oropharynx morphology
(MGI Ref ID J:83662)
- newborn homozygotes exhibit malformations in the oropharynx region
- small pharynx
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit a significantly reduced pharynx
- at E9.5, homozygotes display a reduction of pharyngeal endoderm
- small trachea
(MGI Ref ID J:83662)
- newborn homozygotes display a reduced tracheal size
- hematopoietic system phenotype
- athymia
(MGI Ref ID J:83662)
- newborn homozygotes lack a thymus (a derivative of the third pharyngeal pouch)
- homeostasis/metabolism phenotype
- cyanosis
(MGI Ref ID J:83662)
- newborn homozygotes appear cyanotic
- hydrops fetalis
(MGI Ref ID J:83662)
- at E14.5, homozygotes exhibit severe edema
- digestive/alimentary phenotype
- abnormal palate morphology
(MGI Ref ID J:83662)
- newborn homozygotes lack a secondary palate
- absent esophagus
(MGI Ref ID J:83662)
- newborn homozygotes lack an esophagus
- growth/size phenotype
- decreased body size
(MGI Ref ID J:83662)
- newborn homozygotes are slightly smaller than wild type littermates
- reduced embryo size
(MGI Ref ID J:83662)
- at E8.5, 4 of 50 homozygotes display a reduced body size
- immune system phenotype
- athymia
(MGI Ref ID J:83662)
- newborn homozygotes lack a thymus (a derivative of the third pharyngeal pouch)
The following phenotype information may relate to a genetic background differing from this JAX® Mice strain.
Chrdtm1Emdr/Chrdtm1Emdr
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * SJL/J
- lethality-prenatal/perinatal
- perinatal lethality
(MGI Ref ID J:60303)
- homozygotes are stillborn with normal early development and neural induction
- embryogenesis phenotype
- abnormal branchial arch morphology
(MGI Ref ID J:60303)
- homozygotes display defects in pharyngeal organization
- craniofacial phenotype
- abnormal branchial arch morphology
(MGI Ref ID J:60303)
- homozygotes display defects in pharyngeal organization
- cardiovascular system phenotype
- abnormal cardiovascular development
(MGI Ref ID J:60303)
- homozygotes display defects in cardiovascular organization
- hearing/vestibular/ear phenotype
- abnormal ear development
(MGI Ref ID J:60303)
- at E12.5, homozygotes exhibit abnormal inner and outer ear development
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